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Documentation Index

Fetch the complete documentation index at: https://hubify.com/docs/llms.txt

Use this file to discover all available pages before exploring further.

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Papers

Hubify Labs treats paper writing as a first-class workflow, not an afterthought. The paper pipeline takes raw experiment results and produces arXiv-ready PDFs through a structured, agent-assisted process.

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Paper Lifecycle

1

Results Collection

As experiments complete and pass QC, their results, figures, and metrics are tagged for inclusion in a paper. Agents organize results by paper section.
2

Outline & Claims

The Paper Lead drafts an outline and a claims table, a structured list of every scientific claim the paper makes, each linked to its supporting evidence.
3

Section Drafting

Agents draft individual sections (abstract, introduction, methods, results, discussion). Each section is reviewed by a different model before merging.
4

Cross-Model Peer Review

The full draft undergoes peer review from multiple AI models (Claude, GPT-4, Gemini). Reviews check scientific accuracy, logical flow, missing citations, and overstatements.
5

LaTeX Compilation

The manuscript is compiled using revtex4-2 (Physical Review D format). Figures are embedded, cross-references resolved, and the bibliography generated.
6

Revision Rounds

Based on peer review feedback, agents iterate on the draft. Each revision round is logged with a diff showing exactly what changed and why.
7

Submission

The final PDF, source files, and supplementary data are packaged for arXiv submission.

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Paper Structure

Every paper in Hubify Labs follows a consistent structure: 
\documentclass[aps,prd,twocolumn,superscriptaddress]{revtex4-2}

\begin{document}
\title{Your Paper Title}
\author{Your Name}
\affiliation{Your Institution}

\begin{abstract}
...
\end{abstract}

\maketitle

\section{Introduction}
\section{Methods}
\section{Results}
\section{Discussion}
\section{Conclusions}

\bibliography{references}
\end{document}
All papers use revtex4-2, not aastex631. Use \cite{}, not \citep/\citet. Use ruledtabular, not deluxetable.

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Claims Table

The claims table is a living document that maps every assertion to evidence:
ClaimEvidenceConfidenceStatus
”Matter bounce predicts f_NL = -4.375”Branch V derivation, EXP-031HighVerified
”Quintom-B favored at 2.3 sigma”MCMC EXP-048, w0-wa chainsMediumUnder review
Agents cannot write a claim without linking it to an experiment or derivation. This prevents hallucinated results from entering the manuscript.

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Readiness Tracking

Each paper has a readiness percentage that tracks progress across dimensions:
  • Content, Are all sections drafted?
  • Figures, Are all figures generated and placed?
  • Bibliography, Are all citations resolved?
  • Claims, Are all claims verified against evidence?
  • Compilation, Does the LaTeX compile with zero errors?
  • Review, Has the paper passed cross-model peer review?

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Version History

Every change to a paper is versioned. The version history shows:
  • What changed (diff)
  • Why it changed (review feedback, new results)
  • Who changed it (which agent)
  • When it changed (timestamp)

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CLI

# Create a new paper
hubify paper create --title "Spin-Torsion Cosmology" --template prd

# Check paper status
hubify paper status paper-1

# Compile to PDF
hubify paper compile paper-1

# Run peer review
hubify paper review paper-1

# List revision history
hubify paper history paper-1

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Figure Management

Figures are automatically linked to experiments: 
# List figures for a paper
hubify paper figures paper-1

# Add a figure from an experiment
hubify paper add-figure paper-1 --experiment EXP-054 --file posterior.png --caption "Posterior distribution"
All figures must be in the same directory as the .tex file (or symlinked) for LaTeX compilation to embed them correctly.